Scaffold Ga0207937_1001351

Overview

Basic Information

• Taxon OID: 3300020544
• Scaffold ID: Ga0207937_1001351
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7892
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032253	Metagenome / Metatranscriptome	180	N
F046332	Metagenome / Metatranscriptome	151	N
F051885	Metagenome / Metatranscriptome	143	N
F066725	Metagenome / Metatranscriptome	126	N
F070906	Metagenome / Metatranscriptome	122	N
F078638	Metagenome / Metatranscriptome	116	N
F091313	Metagenome / Metatranscriptome	107	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207937_100135110	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSNDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0207937_100135111	F046332	N/A	MNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYHGDNLVWVEPMREIANAIVKLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0207937_100135112	F066725	N/A	MCTRGVTWFTNPEGGEFTPTQLWDLREDLTKHLIIVLGRLTVEIGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQL
Ga0207937_100135115	F070906	N/A	MTENTERSLVNGSDEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLAPFWDEECLRLRYINCTCLDEGTPV
Ga0207937_100135116	F051885	N/A	MSDSSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0207937_100135117	F078638	AGG	MKKFFRMSSKTESEKLGGMTVPKRSHDPVIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAVNTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLL
Ga0207937_10013513	F032253	N/A	MSQAIETMNNDPRVIVKNLKESIVEGLPFLALLTKRLMVAINKLPHLVQIVIAPIAEQAQAKTAEMILQYESALLQNETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR
Ga0207937_10013518	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNEMALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKQDATYTVFVNTKCQQTLI