Scaffold Ga0208089_1005796

Overview

Basic Information

• Taxon OID: 3300020543
• Scaffold ID: Ga0208089_1005796
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2229
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005585	Metagenome / Metatranscriptome	395	Y
F013317	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208089_10057963	F013317	N/A	LIEKKKWDYLADIRARTGAKTLYINATPQGIYQFDLGALIEPEWVLKSLPITTDFSNKAHSERLCGFFDIRLAELLLV
Ga0208089_10057965	F005585	GGA	MLVTPCSTGGLNMATRGTIFYAFSKSVRHSVFSSETHLTWRLLLSRPNSQECWKVQSAKIRISISLDMPLSWVDADFLHQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQACADDSQNWPDGTFYSLKEQLEDAINQFAGREKLDVELPR
Ga0208089_10057966	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNTCDVYIIKTELYRTEADANPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVNQGPKKPIETTKPALAEFIKEQRPNDPEPIVWDVTAVADALGAEIIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMRIGSDGHWVF