Scaffold Ga0208089_1000459

Overview

Basic Information

• Taxon OID: 3300020543
• Scaffold ID: Ga0208089_1000459
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10503
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F029798	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208089_100045913	F010673	N/A	MNPKLIPILERIIARDTILQSFHADNLPQSALAYVRALYLNDNFLWLTPEEQDLLETLPPFADNISESFREGSGGDASIYHLFDDGSLWIKTNAYQQVWADTRDFAVESILPLMRLDRMDAELLREIGMDDHIDEVRDDFFGAFAHVLHLTCGIAYCDAREHWGAWARQLSDGEREKAELGGAKSGHAEGLRFASEYTVNA
Ga0208089_100045916	F002227	N/A	MKLTIQSRDNAQTIVDLFNAIITGEVEERGATPLSIYDDDRHICSLTDKLGNQILELIIEREAGDKLCPGTPDSETV
Ga0208089_100045918	F001964	GGAGG	MIRNQFTPPKFKVQLVGAIGWSDLKERVVSHRMVEFPTRKEAEKAAKELNPGEYAQGRIRVVPTTWPEDYDVYPVVERVSEKPKSVS
Ga0208089_10004592	F029798	N/A	MATISCAEAANLIAEAQGASCKSPRERNLLEIGLLWEAATLGGTADITADNTVITADSTIITADMTEFL
Ga0208089_10004596	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNSSWVTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPVFTNQGMTIIFRRCTGALTTVICS