Scaffold Ga0208089_1000361

Overview

Basic Information

• Taxon OID: 3300020543
• Scaffold ID: Ga0208089_1000361
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11949
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F025437	Metagenome	201	N
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208089_100036117	F025437	GAG	MLMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMATIDKPDFQALEQELNKLNEVVAELSKYKELYLTLKRTFNEF
Ga0208089_100036119	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRVDSEQMIYEIQRLQGIIEDSL
Ga0208089_100036123	F009600	N/A	VGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVKSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0208089_10003617	F082108	N/A	MLYIVTPCSRPHNLVRLKQHIPAYATWVVMMDASTNYKGATSASVTHYSTRTGDMGNPLRNEFLELYADSFTKEDWVYYLDDDNILHPKFLEEWNNLNGLDCSIVTWGQIGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMTYEADGIFASEAARLGTLICVEQYLCYYNALK