Scaffold Ga0208857_1002631

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1002631
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3069
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100263111	F049625	GAGG	MLSEIDLKDWIEQPSIPLYDVPKETPVKTPNGMLWFSHIDGMYSLSYDANGSPVHMKAWVKVNPYRRKDND
Ga0208857_10026318	F054861	GGA	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVKSIRNLGDKWLFAHHVQRKEPTQ
Ga0208857_10026319	F026266	AGGA	MSTIDTITFHFIGELEDSGAIVDVQCQIDEDGDCRDLDSVHYQLFNVLDVISHSQWESLQWDASKKYKAEHMEQLTIDHDLDHA