Scaffold Ga0208857_1002423

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1002423
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3188
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F079784	Metagenome	115	N
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_10024233	F100269	N/A	MESVYKYISFATIIVLLFLLLKTCGDGVEADYRLKQTIYEDSVLIASQKKIIAQGSSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMIDKKPYIQLPKPFLKTTEWYTIGGMINRLGWLQLDSISIPAKFTYAVGDTMRTGFVNRLLKKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKVGVGVLIGVAAVSAVK
Ga0208857_10024236	F060610	N/A	MTMDDGRDSTYTTLDQGCVVGIGCKVHTHHHVIKLEPQVVYKSMEKFTIFGKQYCTNQWGQTFEIAADEPVPEPKPMQQFYASDTIQPTTSAFLLAPKPEAKIIIKPRTEFTEYKPTMDAPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS
Ga0208857_10024237	F079784	N/A	HTFLITCGAMTTRKKVSKPRQVLDIIIKHWRPTIGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKSNDNG