Scaffold Ga0208857_1000817

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1000817
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5287
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F006264	Metagenome / Metatranscriptome	377	Y
F016785	Metagenome / Metatranscriptome	244	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_10008171	F016785	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSAQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIIMVSPVREPVTQYKEVEGTRDQLRVFETMAAEKGLTVKRQNMRKIDVDLEAVMQDMMNPDDEPGTVQEEVNEAISANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKAQFPYIDLEKMAEHA
Ga0208857_10008173	F006264	N/A	MEDHSSIFRQKLSAQAEACARKTLEWLQKDLQGDRVLQPEDVYYLASAADLLLTMRDAYGKK
Ga0208857_10008174	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPTDFQTDLNPYIDRKELIPVDEKKKIPSRSTDLPDEGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERVNKFGQKQPEKYSWLDPRTEEILLRRPDGTFTEKGRGLYAFCIGEKGGGIWTLIDRNVMNIAEKNVTNPWA
Ga0208857_10008175	F040590	N/A	MSYGKVISGGKQMTNGLTKGINSKLKGFEDSHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTSV
Ga0208857_10008176	F099270	AGG	MSTNFLYAQSPNRTGNVSKHCPTKSGGSTNVTGPKHGVSRPTGQQGAPKATGNIASRNQKVQVSTHADYCGCIKNDGYMDKSTKNYLG
Ga0208857_10008178	F001915	GGAG	MEWTLAHPLHDVDDIVELADVEYGAEADGILERDRNVFRKNVTIAATVQLFDKGREFLAVCRTKPEYKTVVVDGFIDHELTESKLIAYCWFDRGGYATYSNKEISNAKFHHVDLNLPVRQKIKLINEMIDQHILWANSWGIPIICSTSIRKEHDGFMKIHKKRGFTVHGSYAWIKTEDGLKGIK