Scaffold Ga0208857_1000193

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1000193
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14023
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F068425	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100019315	F041191	GGA	MKLFYKPTKLTCEFIVPDIEKSDGVQKVIGFSKGWHHWNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEKVSVALQWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVRGVEVPIEIQINNLKIK
Ga0208857_100019320	F044325	N/A	MKQLIQRLLFGYRNNPAAYIPKGGAKLTHKGGNAEAIHSALVLMQYQIRNAKD
Ga0208857_10001939	F068425	N/A	MKPQHQLITFAILCLLLVIGLNHCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLENVNKRLQVANDAKDSIRKREISLTNTNIVLMKKLRQTLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCDSVSTIKDSLIVNYKAENVTDSLLLKVSKQETKQQRKGKIAAWCVGGAMFLIWLVVGLK