Scaffold Ga0208857_1000150

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1000150
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16821
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F065721	Metagenome / Metatranscriptome	127	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100015017	F011484	GGAG	MSRELEQFLNTEAEWVFERLTECGFDKGNGADRAYYQGRIDQLAQVRRYLGQPQIMREGASK
Ga0208857_100015018	F069714	GGA	MPEYTKAITFDYEGEEYLAEVYVGKNCSDYTLYQGNKRLEDKPAWLEKAELDPEFNFLFFIDDLAWEYEASKTGKVSA
Ga0208857_100015019	F065721	GAG	MTKYVANENGDWWEVVEGESLYLIDTEWEGITNKMEEEDSTPNDDKFEKFIWRYGVPVSVDMEGVKV