Scaffold Ga0208857

Basic Information
Taxon OID	3300020542 Open in IMG/M
Scaffold ID	Ga0208857_1000117 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020542 Open in IMG/M

Scaffold ID

Ga0208857_1000117 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19950
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19950

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F082106	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100011711	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLISLRQAFWGGLAATFLLINTKFLTKFTTEKPTKTAIIDGDGC
Ga0208857_100011720	F041191	N/A	MKLLWKPTKLTCEFIVPDIDKSEGVQKVIGFSKGWHHYNSIRLGIRKEEDYCVLYFYAYIKGQRIIQRLGRYQIGELVKCRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLGNYAEKDGVEGVQVPIEIQINNLKIK
Ga0208857_100011721	F062749	N/A	MKTKSSLILWAVAALFMSFWAVKFAMTGVNYDNSEFITFTLSLCASLTSAVCGAGFMQQWLKK
Ga0208857_100011724	F044325	N/A	MKQLIQRLLFGYRNNPDAYTPKGGAKLTYKGGNAEAIHSALVLMQYQIKHAKGIN
Ga0208857_100011733	F082106	N/A	MKIYTIPEFEEYYHNEYKRSNMNQAFWNTLPIERFNLNKKKVVKKRKAELTTNHLDLPVNNVIQPKETKDAFNTNKFTDLIIAYLKAVHSCNSARRISSEGRYRKGIGYIAGLNKGMEDIQCILRGRLFAIEVKSPTDKISEAQLKRKAAIEADGGNYIVATSFEQMQTEILNLLK
Ga0208857_10001179	F068425	N/A	MKPQHQLITFAALCLLLIIGLNHCAKDNPKPIPFDYKLEAEMIKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRQREISLTNTNIALMKKMRQTLPKECDTVFVLCDEIINVKDSSYAALFNAFQICDSASTIKDSLIVGYKAENLTDSLLLKVSKQETNQQRKGKIAAWCVGGAMFILWLVVGLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208857_1000117

Overview

Ecosystem & Geography

Associated Families

Sequences