Scaffold Ga0208857_1000042

Overview

Basic Information

• Taxon OID: 3300020542
• Scaffold ID: Ga0208857_1000042
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31735
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (45.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012434	Metagenome	280	Y
F014953	Metagenome / Metatranscriptome	258	Y
F016125	Metagenome	249	N
F063471	Metagenome / Metatranscriptome	129	N
F064515	Metagenome	128	N
F077042	Metagenome	117	N
F082107	Metagenome	113	Y
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208857_100004212	F082107	N/A	MTTEQHLELLTELRAIRAALEKPKPMLSLTTASAPTATPDTLPLPAVEILNAGDVQIHFGKNKDTPLSALSDKQLLWYGADRPEQLKKDGTPFAPREADVLLKNACRTLWHQRKSGAPIALTPQPADDGENVPF
Ga0208857_100004215	F012434	AGGAGG	MSTTEALTHALILAITAPDQQRADRAIALAESIGAGCTAKQIAAAKRNASKLTK
Ga0208857_100004226	F100667	AGG	MISIFSDTKKLEYALARLADAAKVDLGLVIKQEGAYVARTIMLITPPTGDKLAKGSQTQIPIVTGGTITKTKAGGLSTNARKQGENAILGDLFGGRQLAKEKSIGIFQKIGNSTEVPPRDGQNETMGVNLGWEGSKKIRIYRKFWQPGASIAQMRAFHYANRNERGRPKQVTRSAIGRWQVQDQMWVSNEAADAYLKYTQKKVGLAKAGFAAAAMACGVRVPAWIRRHMAKAGTAQVQFGQNPFVSARTTGNKIPDLQRVVDSALKIRYKVTLSKYRALLANRAVNLGFAKVKGGMVIPKEA
Ga0208857_100004227	F016125	GAG	MAAVRDFDPAQINSDFSAILEQAGISFTYQGAAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTTSVSAAPKVTQTLSRAGITYYVERVTLDAEGAGCELGVAKVI
Ga0208857_100004230	F063471	N/A	MYSNSAAIFRGDIAGVVEQAKDFEAGLIGTAVMPILDVPVRAGQYPSFVLKEGQLLKSDMKTRSPYSAYARGTRAFVQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVASKIFDSGTFTATNSGTAYTTANLATFDVGADVQEALDRLLSKGESTTNTKVVIPYPVWTRIRASTKFQNRLRGTGLSTDTILNASTQAAAEVFGVAEVLIGRASYDQAPEGVAFSAANAWANTFIWVGSVTQAGAGYFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQYTAEKVVNANAGQLITTQYS
Ga0208857_100004233	F077042	N/A	MNPKVITAALAAVVVCFAGVGVLTVKSVSKHIAASDKEFEMTSNVLSPLFDIYGLAIVDGQAKASKGLINAKEFCDSLAKLQAEAERLLAEFGNPAELVAQHKLVAAYLKKARSACDAGQIETLNSPAMTAELYSVIEPMTALINKALHEELTISRTHKDAADRALLTFERFASVAAGLGIVFAVAPWIGAKGKKPAVVVAKVRKKKTKR
Ga0208857_100004237	F014953	N/A	MTTEQALQNLYAGSRLAPLKADDHDLLRKCAEQIAEALKPKEPKAE
Ga0208857_100004243	F064515	AGG	MPKPEPDLIALSEKLQIDIRTLRNWRKRDGFPHDGTFEQVKAWADSHGLGRVGGSGGGLADLKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLDLLLRLKLTIELGPRGVGMNAAELNVEGGAILSEIREVVNANIATFEAEALDRSRE