Scaffold Ga0208359_1000229

Overview

Basic Information

• Taxon OID: 3300020541
• Scaffold ID: Ga0208359_1000229
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10933
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F004519	Metagenome / Metatranscriptome	434	Y
F007748	Metagenome / Metatranscriptome	345	N
F011581	Metagenome / Metatranscriptome	289	N
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208359_100022910	F098895	N/A	MTLLEKCNADVYKAILDIKANQPVIGEKLISILQNCEEYIDLTCSDMLWFAAHLPISIWDCKVHTFYLLFESQQTTTMP
Ga0208359_100022914	F011581	N/A	MTYHSTRPAKALTNALERLMIAISPADLEQNHALLCEYRRACELLGYDPAKAQWAGVHEVSASQLPKDEDYTVCYYPLLNPEE
Ga0208359_100022917	F007748	N/A	VNLIETTIIGSISAIVGGAIAWLTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIESLETTIHALESENASLKAMQ
Ga0208359_100022919	F004519	N/A	MATFRKYAFPKQSDADKVLALCTGTTAAVDLGVLDGFICYDILWEGDAPAIAAQYETWPEPCGVHAFAGWDAQYAADYKEFATPQSK
Ga0208359_10002299	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLIFRIQEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGADIQVKEGALTPDYQHDQQWRYLQSSIKDREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKTT