NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208359_1000031

Scaffold Ga0208359_1000031


Overview

Basic Information
Taxon OID3300020541 Open in IMG/M
Scaffold IDGa0208359_1000031 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30684
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003127Metagenome / Metatranscriptome506Y
F004474Metagenome / Metatranscriptome436Y
F030021Metagenome / Metatranscriptome186Y
F053267Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0208359_100003128F030021N/AMKAILAVFVAFAVVSCSSERLAQYHVRKALKHGAKLTQDTDTIRIATVDSFPVIRHDSIVWEKFIAYRDTVIKFQNVYVPKTRWQTRIEYKERIKTLRIKGKTQWKTAKAQQVLKYKYKWWWLIVAFAIGFLVRYIITPTFIGRVKLFFKYIL
Ga0208359_100003133F004474N/AMNYLLSVENLKKLGLIHQNTDTKILAVAIRRSQDINVQPALGTPLYKALLQRVQTNTWTPTYLTLMNDYVVPCLVAYVDYRCALLLNEKLTNKSVGRIDDEHIKANDDKMTFTLRDQLLKDAQFYKERLIGFLMDDNGDNYPEYIDCCGSPSMCHEKVTKDQTGYSPLNWTI
Ga0208359_100003136F003127N/AMSCLMTTGYNDRTCTNGKGGIKSVLLFPLGATSGAVVSASNELTSLTVTGETFLYKLKSNLSSYTAPVRVDKNNGTLWYEHELSMILASDSKELRAEIHLLAQNECVCLVENADGTIVALGLGEGLQVADANEYTSGVLKSDRKGHVIVMRGMENDEVPDVDPALYTTLLGQQSPSI
Ga0208359_10000316F053267GGAMANKHRNIDKDELLQMAHNYCDYCIASTKEIATNSGVKQVKERHIPTVSYFLHHWLRREHFDFYCRDNWYHAMKDETHPLSDTIKTIDDFFNSLARDIVANEGKGIFYAKNKLGMHDRQQVETRNVERFDFDVND
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