NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208227_1007286

Scaffold Ga0208227_1007286


Overview

Basic Information
Taxon OID3300020540 Open in IMG/M
Scaffold IDGa0208227_1007286 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2153
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048095Metagenome / Metatranscriptome148N
F091313Metagenome / Metatranscriptome107N
F091933Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208227_10072862F048095N/AMSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPNFELKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
Ga0208227_10072863F091933N/AMERNNRRRITFENFKGGLKIVLAFTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI
Ga0208227_10072865F091313AGGAMDNPYEAQKNVALRKFVIKITSQSIKKRNLIKMATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.