Scaffold Ga0207941_1010011

Overview

Basic Information

• Taxon OID: 3300020539
• Scaffold ID: Ga0207941_1010011
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1579
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069698	Metagenome	123	N
F073090	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207941_10100113	F073090	GAGG	MNLNYTSMMYWYQTSMEIDSLYQLEKLKTHYYSKITGIQANSYETLAQIYDNKQSIEKAIAQEKELQIKDLKKRNRRLVAHNVTLSLGISALAVSTLYFVIL
Ga0207941_10100114	F069698	N/A	MDIQPRDIITIIGGAVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLAESLKDTKDEFNTKLNTMKEEQNKAIDKLEKKIDVIASQNLTISTNLAELAGYIRGNK