Scaffold Ga0207941_1007052

Overview

Basic Information

• Taxon OID: 3300020539
• Scaffold ID: Ga0207941_1007052
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1991
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042325	Metagenome	158	Y
F050949	Metagenome	144	N
F091368	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207941_10070521	F050949	AGG	MLTIKNRGRLISDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI
Ga0207941_10070523	F042325	AGGA	MLTIENIQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGAKHPKYVNFKLLRYNEFSSTLGEWKMYNDQDNGYTTLTKGLLNFKMFVGMLGGQLHSFSN
Ga0207941_10070526	F091368	N/A	NTPVQKTVLDAQQIRDIAEAQAKQTMIEMMKQEQEKRKQTFLTIENIDKIKGHKYSEWLTVGGVMESDTHYEFTLLDEKHTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLSTIAGIIECMQEI