NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207941_1004507

Scaffold Ga0207941_1004507


Overview

Basic Information
Taxon OID3300020539 Open in IMG/M
Scaffold IDGa0207941_1004507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2686
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F018001Metagenome237Y
F024555Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0207941_10045074F018001N/AMLTIQNIEYLKGKELNDWKVLDAGQDLRAELGKNIYLLTFARLDKGVLQDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAVNIRDKDVFFGRILYKINEEYYKRK
Ga0207941_10045075F007690N/AVDDIDKLNYMLTIKNILKLQNQPIWDGWEVKLIYEGNHNGTYIFELHRESAWGNGNCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0207941_10045077F024555N/AMLTIKNIEKLYKLNVGNWRIGKVVTLDSSYLMQLYKYNRRETMQVNIERTPIGEGDTALYELWFWADDSGGAKPIRRLLRKCDFELGPPYVIKNIENMMNLK

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