NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207941_1001893

Scaffold Ga0207941_1001893


Overview

Basic Information
Taxon OID3300020539 Open in IMG/M
Scaffold IDGa0207941_1001893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5015
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024743Metagenome / Metatranscriptome204N
F047570Metagenome / Metatranscriptome149N
F075864Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0207941_100189315F075864N/AMNPDPNLWMEIPQEVKDAALLLGNYFKKQNIDNWALYDVCSRKSVDNLENQVKNLETWKNKQLYGFID
Ga0207941_100189316F024743N/AMDVVTLSNLYSHASGAYNEAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYESRS
Ga0207941_100189317F047570N/AMTDENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGTFTEIDSLFELVKELKEMNKEE

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