Scaffold Ga0207941_1000045

Overview

Basic Information

• Taxon OID: 3300020539
• Scaffold ID: Ga0207941_1000045
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36989
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (27.94%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093295	Metagenome	106	N
F099304	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207941_100004532	F099304	N/A	MKEIQFVSDLTEAEVRQLLFDIYERIPIAGEDLSYSALPDKITRYVNEAHRLFALEEAVTAYIVDECNNGDIGVQDPINFLLASHRMLRHNLHDTWKEEY
Ga0207941_100004540	F093295	N/A	MIKRIFQDLDECILHTYVNSMPPTEYVEFILSEDMHTYRTMIRPCAKRLFEYYNSVVGKENVYILTSATRDYAESLNRLGEFGLDNDHIYTREDIQQYSISHGYGGEGTLPMPIADKDNVLIDNLPPRYNYNKMDMMGIVTKNYYQTREYYGLNDDDEYFFEDVVEFIKARL