NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208595_1010069

Scaffold Ga0208595_1010069


Overview

Basic Information
Taxon OID3300020538 Open in IMG/M
Scaffold IDGa0208595_1010069 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0208595_10100691F018161AGGMNELENKPDYSARQQVVRRIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKNHNGN
Ga0208595_10100692F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0208595_10100693F025270N/AMNQETLENGNTLRSLRVRQATKVSKHKLKRQWQKIAAEALAKLNDVKTNEINTSEHNMAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS
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