NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208595_1006169

Scaffold Ga0208595_1006169


Overview

Basic Information
Taxon OID3300020538 Open in IMG/M
Scaffold IDGa0208595_1006169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2508
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F053818Metagenome / Metatranscriptome140N
F058690Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208595_10061692F058690N/AVKTDKTVKNILRISTESMSLLTKEELEVRLEQIQQEKIDVIRKKQRATEKLSRRGLTREYRATLLDHIKLLITMEEKLHEFEAQCNIMLYHLNHHCKC
Ga0208595_10061693F015181N/AMNQTLLSKEDVMILDLLERVKKKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIADYVTEKFFQMKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK
Ga0208595_10061694F015058N/AMDDSWIYTLNSDIMRKDRERLKGQGIVISHLVSKCQNKTDKEKEYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPSIQIPAEAVRTLAYNNHESLKQKLGAIAVARASILRKKGLMQFHSLSESGNNPVDLCETEKTIVLMKLEAKLLQLEHLYKSLLEIKPVELKMFQ
Ga0208595_10061695F053818N/AMKEICELLNELDAGKEKFFIDRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPIQREAVNLARVLLTGDNESVVSKSRVVTDLLQSIKETIIQMEKVCKGSKATKEVKELAIESIVVLNSTEARLGYLKHLYEKIIEKTSLVIVGT

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