Scaffold Ga0208595_1003111

Overview

Basic Information

• Taxon OID: 3300020538
• Scaffold ID: Ga0208595_1003111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4267
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F029723	Metagenome / Metatranscriptome	187	N
F032529	Metagenome / Metatranscriptome	179	N
F036545	Metagenome / Metatranscriptome	169	N
F051885	Metagenome / Metatranscriptome	143	N
F061798	Metagenome / Metatranscriptome	131	N
F070906	Metagenome / Metatranscriptome	122	N
F078638	Metagenome / Metatranscriptome	116	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208595_10031111	F070906	N/A	LVNGSDEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWDEECLRLRYINCTCLDEGTPV
Ga0208595_100311110	F104447	AGGA	MTSTKTGYLCTTIHQLKLKSEFCDIINSIAVKKDFDSNARQYVRIHEILQEVKTINPDWRLTACAKYSWK
Ga0208595_10031112	F051885	N/A	MSNSSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0208595_10031113	F078638	AGG	MKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAINTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKEESSSSSSSSTEGLD
Ga0208595_10031115	F036545	N/A	MSNTTDETLKHFLKNERREKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRYPVKKDDLEEIKSLTIS
Ga0208595_10031116	F029723	N/A	MTSSDSSNGRQKVLMTPMQLSVYWRKVAAEALKLLNDIHLDEDHNSEDNLSAYKLFHEQLRELKRIDPVRPFNQLTMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0208595_10031117	F061798	N/A	MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLITRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSENGNPSEGKTNS
Ga0208595_10031118	F032529	N/A	MAENRRLIDVTDAERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKENTSSKETSVEDTSCEVTSSTDTTSKNEAKK
Ga0208595_10031119	F029090	N/A	MKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNSIDPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLNKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN