Scaffold Ga0208595_1002356

Overview

Basic Information

• Taxon OID: 3300020538
• Scaffold ID: Ga0208595_1002356
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5221
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F032254	Metagenome / Metatranscriptome	180	N
F040465	Metagenome / Metatranscriptome	161	N
F042744	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208595_10023561	F008745	N/A	DTLVCPRLECMDAQELLDVWLLPLVLEVGGILEEAYCTSHQLLSGGQGEERTLGLLQHQLMTAITELQVVQGWVACNMSSDKECRVLDGEEEDKSEGKVLKEGSEAHQPANQQADCRKQIMCRCEGCRWRRPRHE
Ga0208595_10023562	F040465	N/A	MSDKEVDDEYPQWPDITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIEYTYHSSFQLLESNNLKNESLLEALRGMYIFAMAEVNVAKRKTTLS
Ga0208595_10023563	F032254	N/A	MCVRKVGYLVAEKRFVAIPLLPPPPPDKDATSSKFVVEIQCSNRACRYHGCRRQKVALMMQSLAQCARSCGNFSCFYPGCRVIPVLDPSPQLFCVILQA
Ga0208595_10023564	F042744	AGCAG	MESSQVATAVVGPSVYKNVLGMIKQLRKMILKWISDRETCSPSLIQMFEGTKRWFREQVKIHFADSQKRYLQWRWRLAEKMFLQFREGQALTAAPALPARGKAAKAADLHLELQRQMGKAANASAKKRQRKRIKVAEPPQLSVIPE