Scaffold Ga0208595_1000701

Overview

Basic Information

• Taxon OID: 3300020538
• Scaffold ID: Ga0208595_1000701
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11832
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038679	Metagenome	165	Y
F045097	Metagenome / Metatranscriptome	153	Y
F060913	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208595_100070117	F045097	AGG	MAMTKDDLKDKAIEAIPYVAVFGVAALAVYGITKIAQSLDGMDIPLDWGQDPYLTELSKNSRED
Ga0208595_10007017	F060913	AGGA	MIKVYQIQLTDAEITAVNNGETSDRIQAYFTRSFAVPFKAENFQYYAHVANVDTNDMEEAFAAMNLWEGATVEKLGPCSSMSVGDILEVDGKLFRCATFGFDEIKA
Ga0208595_10007019	F038679	AGGA	MSEVVKKNVFLETVKWAGTACVVVAATCRAFDYHTVDLLVSIAGAGLWGYAGFAMKDKALIAVNAFVVGILLVGVIV