Scaffold Ga0208722_1008300

Overview

Basic Information

• Taxon OID: 3300020537
• Scaffold ID: Ga0208722_1008300
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043833	Metagenome / Metatranscriptome	155	Y
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208722_10083002	F102508	N/A	MNQPSDRVSLAEFLDIKRLDATMHHLGSLRASWLATAKPQRIDALRVAALSLGNIADRQLPASERRTLGQPTHYMLMGALALIASALAYTVGVEQGRARCPLGSAVAQTVVR
Ga0208722_10083003	F100355	AGCAG	MSKPIPKRRPGPGTRVSGAIYDAIGNSVTVYAHLSADAYQQLKLLQEQTGDTQAGAFRSLIFRGAESLGFRDSVSAMDALAAANGGASDARAVHHLIRIGAGLNPILVNPPKP
Ga0208722_10083005	F050892	GGA	MITDPRHRELLQRAIDAQTVVADELQSAYNARTALPVEHPQRLETRILWRNIKALEALISGAHDLLAGMGGDVTLQGRSQS
Ga0208722_10083007	F043833	N/A	MTCPDADTDALLLQIDAAMAAYSASIDRGLALASEMQQLADAVDSGMSDARAEFYEWW