Scaffold Ga0208722_1007451

Overview

Basic Information

• Taxon OID: 3300020537
• Scaffold ID: Ga0208722_1007451
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048095	Metagenome / Metatranscriptome	148	N
F091311	Metagenome / Metatranscriptome	107	N
F091313	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208722_10074511	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFAHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYN
Ga0208722_10074514	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNICRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFELKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
Ga0208722_10074515	F091311	N/A	MVNNKTTIKGNREIAEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILGLFYRISIALEIKSRVKLMKTLKRLAREVFILSLRSRKSWKKKLPRFLIANKHVPI