Scaffold Ga0208722_1004250

Overview

Basic Information

• Taxon OID: 3300020537
• Scaffold ID: Ga0208722_1004250
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3096
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008745	Metagenome / Metatranscriptome	328	N
F040465	Metagenome / Metatranscriptome	161	N
F057316	Metagenome / Metatranscriptome	136	N
F081269	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208722_10042502	F057316	GAG	MSSANKEVDECGTGARWPPITEKQLSCALAFVKKREPFQDGKRLDDWLRIMEDVVEDIGIVYRTTFRLLETNNFKNESFLRLLRALYIMGLAEVDAVKRTRA
Ga0208722_10042503	F008745	GGA	MSNGYQITEEERDTLVCPRLECMGAQELLDVWLLPLVLEVGGILEEAYRTSHQLFERGQGEERLLGHLQHKLMTAIDELQVVQGWIASSCNMSSDKECRVLDGEEDKSEGKVLKEGSEANQSADQQADCGKQKSTSYYQWKLRHE
Ga0208722_10042504	F040465	N/A	MSDKEVDECAQWPEITEEELSFAENLWNRDSSPDEQRLDDWLRVMEEIVATIEYTYHSSFQLLESNNLKNESLLEALRGMYIFAMAEVNVAKRKTTLS
Ga0208722_10042506	F081269	N/A	MEALPMAVSGSLYKSALTLIKELKKLVIKLTREGVSCSPSVIQMFDETKRWFMERIRVHFADSQKRYLQWRWRAAEKMFLQFKDGKPLTSVAATSVVNVAASPTRRPRKRVKVAAPAPSNLTVIPE