Scaffold Ga0207939_1014104

Overview

Basic Information

• Taxon OID: 3300020536
• Scaffold ID: Ga0207939_1014104
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1195
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F038087	Metagenome	166	Y
F051701	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207939_10141041	F006587	GGAGG	MVSKNYEGTGFLLVGVIVGITFTWAVMEFTHLKDKNNKNLKCVQGELYEEIRPNFYVKSHLECFEQRSF
Ga0207939_10141042	F051701	AGGAG	MQVLIELNDDQADEVLVESLKSGYQVNLNFPDEPNFYEINQAFRTLLAYYMGDKECAKYLHARAKVRKNYNAKRLVEANNGL
Ga0207939_10141044	F038087	N/A	TIVLSINSDSVSRFLFDDYINACHDAGLMVRYEPYTKDMYAELNDKALDIEKQDALASLEEEILNNKACINGSCED