Scaffold Ga0207939_1001825

Overview

Basic Information

• Taxon OID: 3300020536
• Scaffold ID: Ga0207939_1001825
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4878
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049630	Metagenome	146	N
F064712	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207939_10018253	F049630	AGGAG	MNCQVCSRTTQVEGACRVCFMKVKSSLVELPDLHFEAQMFITPGRSGSGKASAERSIGVNVAALDFSVATDLLRTLHSWEVIIRSDRKLTPPALVPKEPSIDAEVQATVDFHCSHLEWSLAQEWAVEFAGEVYGLHSKGRSAAKRFTEQARRIPCPTDDCKRFVVIDVENLMDDVTCFGCKQSWSVLRLIALAMSNPDRKFYLDVEAIAAWMGTTERTVYNLIKTHKVERRGSLYDLSAIIKARNSTL
Ga0207939_10018254	F064712	GAGG	MSYLDFKPINCRACGKLIWAGHSSTGFPTKLDIERLNILEEIIKKVSQIRTYEAHRTLVSFEVTPRIGAYVIGSEFKSETIILAEHRCSTFTLFESEPPDYWNRKIIQKPTLEEIPF