Scaffold Ga0207939_1000861

Overview

Basic Information

• Taxon OID: 3300020536
• Scaffold ID: Ga0207939_1000861
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7961
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083667	Metagenome	112	Y
F093535	Metagenome	106	N
F098930	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207939_100086111	F098930	N/A	MNESLEKQPSNRKLNQKRKFSFGSGRRRNQLQDKKINIRVSLSVETFKRVDSLSKRLDCSLSSAVERLIRTQESESIEPTREVNWDEFKAKRQFYQLTDVLDASFRRRGRKA
Ga0207939_100086113	F083667	N/A	MKTKQALTALEQALKLTAIEQPKRDDEFTAQEFADKADMHVEGARRLLNRAVKEGKFALRKTSKGHYYSIK
Ga0207939_10008615	F093535	AGG	MIIDAMTMTHRNKYLENMKKYQEIENLIADIWYQNPRWPSTFSVCCNGCGNSARGGRECIYCLEKELSKLTSQEEARSFVSAVRQVLTAEESLREHSKPF