Scaffold Ga0208228

Basic Information
Taxon OID	3300020535 Open in IMG/M
Scaffold ID	Ga0208228_1003578 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020535 Open in IMG/M

Scaffold ID

Ga0208228_1003578 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3008
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3008

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F008991	Metagenome / Metatranscriptome	324	N
F010534	Metagenome / Metatranscriptome	302	N
F015440	Metagenome / Metatranscriptome	254	N
F017436	Metagenome / Metatranscriptome	240	N
F036561	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208228_10035781	F036561	N/A	AQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIGNLQAIAVAEEKVDLPESLEIL
Ga0208228_10035782	F007918	N/A	MCDTTLEESDPFLDLELDIEAGIKQELLSILANVETVTEAMNKAILKEEDRREQFRILCSSIDYLFGENIKVIEKRKDDLEEIDPSLHSIACKLSTRMERLRNVAIKPDLKSMKTGMRRVLSQQRIEKLQTNPQQEEQRPQKG
Ga0208228_10035783	F010534	AGAAGG	MSDKVGEKQEAIMNLIDQQIKESLKDQASRLEILQDRIKDAIDTSTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICGLEKILGEESLEIAEAVKVALNNRNEEARNRILGELLEETITKIEALSVRVPQAPQP
Ga0208228_10035784	F008991	N/A	MNLTVKITEQVEKKLEAVLKGKYDNRTIWMYYKISLQMLRDIIEDLIACHHTTHPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLRSPIVIQFCEENGWTI
Ga0208228_10035785	F017436	N/A	MDGQYRKMFRETVITVQKLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMDRLKSTTFDEWKNFLITGSTEFFDNRF
Ga0208228_10035786	F015440	N/A	MEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSDQWTQEMLKTHIFIVIQQEMDNILKVLNPKITEPLDKNQESTIRQEWTKVLSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208228_1003578

Overview

Ecosystem & Geography

Associated Families

Sequences