Scaffold Ga0208596_1002618

Overview

Basic Information

• Taxon OID: 3300020534
• Scaffold ID: Ga0208596_1002618
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4217
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208596_100261810	F014610	GGAG	MPIYTFENNGKSIEHIAPMGTDSVVLDGKRWMRQPVARFGVTGFASEPGLKDQVKKGFSRMEERQGSRFESTFTKNQIRKIWDI
Ga0208596_100261811	F010688	N/A	MVIAVSPRGHHRKGGAPSSHSACGCDEADNNAPMISIPLEALSTDMEDGQQAMPEVGDEVVLDDVRGVLKKLENGEAYIEIRSVNGMPAEYENKSEKAMASKEPMDEKGMREMVEEYDSEMES