Scaffold Ga0208364_1010682

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1010682
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F028163	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_10106821	F028163	N/A	SMSRVTEMIDVDTMIGRTLIDGKIVAEFKCEQCDQCQRIEILDRAGYLRAVGGEPVLWFCSQCRK
Ga0208364_10106822	F011152	N/A	MTISAADEWAIHKRAVDVVFSYSGQLGTSIHYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINVSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAI
Ga0208364_10106823	F016529	AGGAG	MPLLRFDCSICKKLYGDGRKEHLITKGAELTMHEWFAQCSGCGTFSVKLVDDSLVAGLE