Scaffold Ga0208364_1004091

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1004091
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2554
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F007747	Metagenome / Metatranscriptome	345	Y
F011918	Metagenome / Metatranscriptome	285	Y
F021063	Metagenome / Metatranscriptome	220	N
F039993	Metagenome / Metatranscriptome	162	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100409110	F011918	N/A	VNKKYNAPPWYPTDAQQLWAYRNASENPKAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
Ga0208364_10040913	F021063	GGTGG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT
Ga0208364_10040914	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKEDEAKLVGLGR
Ga0208364_10040915	F007747	GGA	MEERKMKIGTIKFGKSRPAPKAVIVDVSYDKETEAALFKAGLDLLKKDKEAVIEYVIQKSLAYQLKK
Ga0208364_10040916	F039993	AGGA	MKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMIWSSALDEHGKIWKNVK
Ga0208364_10040918	F041081	AGGA	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ
Ga0208364_10040919	F002009	AGGAG	MNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL