Scaffold Ga0208364

Basic Information
Taxon OID	3300020533 Open in IMG/M
Scaffold ID	Ga0208364_1000784 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020533 Open in IMG/M

Scaffold ID

Ga0208364_1000784 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6821
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6821

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F011388	Metagenome	291	Y
F027501	Metagenome / Metatranscriptome	194	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_10007843	F011388	AGG	LKPLSNDVALDLARGRSDIEFFALRWLGIQGNPGQVNWWKACSERDETGYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGTANPDPNDPESAVRWSNAPYEWYHVGIQQETAELVFREVEAILGGNHPAQKGRGCPLSKELGKIIDTSKKYRGEYPWIKFHPVVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYSELWEKGNPENPARDDKFTSFRLSTRDNIGYGLTQENFDDVVRQQAPYLIPQNIDGYFIEARDAFFWSQSILASYKTLDAEISPERNHRYVQGVDPGISHDATWAITLDITDRRKIRGVRIRKRSGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKAKKVELLNDLKAVIDKGQVEFPVGGPWDELKRQLLIYRLDDKKLEQDAVMALAIAVRHALRNPEKGVENPTFTYFGVSD
Ga0208364_10007847	F027501	AGGAG	MYSDIKAGIRWVIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNSAFGIKEKSPEDKAAADKQFDI
Ga0208364_10007848	F006017	AGGA	MKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYTVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLIDLIKTAKEMGAKARYAKSWDDVVISAHRGAGLIIWVQQAVDYPAVEISEWHKKWQNYWIKKDKKHIAVGYGHMTAAGWDAVDGWQWACPTRSGKGKEKFGVVVTEEQLKQIAASKKKITGGAAFKHVAIVEWK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208364_1000784

Overview

Ecosystem & Geography

Associated Families

Sequences