Scaffold Ga0208364_1000055

Overview

Basic Information

• Taxon OID: 3300020533
• Scaffold ID: Ga0208364_1000055
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28633
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (44.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F057305	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_100005531	F040538	AGGA	MEITNVDRPTKIQRVFDYMRKGTPLTAGEARKRFRVGNMRATMHDLREAFDRFEMNYTVVRELRNGRSYYRVSRNRVR
Ga0208364_100005533	F012760	AGGAG	MKISELVYEIRNLARKEEDPVKKDLFYQCSKSMEILGNIAKIADLAVAEHNATEVPAVNEEDIIKWNIDDVTLKMLEEYVDSLVQYGFMDKDDRWPYGDQPFTKFVSKYLKSQIVNDSNI
Ga0208364_100005534	F057305	N/A	MRNKKKILNTKRKQNENHSYYFVAHVDSSGEVTPLLLTDKEFLTAKKRANRNKEDVPLDFIVFSQFHKN
Ga0208364_100005540	F021985	N/A	MSNDSKNSDHLHAILFREAKIILSKYEEYLRDKITSKELANKMLSLRDAIQRIEESK