Scaffold Ga0208601_1012154

Overview

Basic Information

• Taxon OID: 3300020532
• Scaffold ID: Ga0208601_1012154
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1335
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038092	Metagenome	166	Y
F042325	Metagenome	158	Y
F092047	Metagenome / Metatranscriptome	107	N
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208601_10121541	F042325	AGGA	MLTIENIQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGAKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTTLTKGLLNFKMFVGML
Ga0208601_10121542	F092047	N/A	MLTLKNFINIEGTEFQLSSGNKFLIGIAKDEGLHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC
Ga0208601_10121543	F103248	N/A	MLTIKNIHKIINITSPLPYKWYINTVDELPDDLYGFSVLIGNIQEIFYLNRESQYMSGRNEPVYRLYKDFDQSKINRWLSLHQISPYFIKQAIDKMLNE
Ga0208601_10121544	F038092	N/A	TLRQKIQTLQGINNMTPQNNVVQQIRDIAEEQAKIALAELLKQETEKRKQTILTIENIDKIKGHKYSEWLTVGGVMESDTHYEFTLLDEKHTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLNTIAGIIECMQEI