Scaffold Ga0208601_1003705

Overview

Basic Information

• Taxon OID: 3300020532
• Scaffold ID: Ga0208601_1003705
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F041191	Metagenome	160	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208601_10037053	F008546	N/A	MKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAAINPFLCLPMNHYTIEVKTFKGRAIIALAFSTGFVVGILTIRPFFI
Ga0208601_10037054	F041191	N/A	MKLLYKPTNLSCEFVIPHFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYAIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEINNLKII
Ga0208601_10037055	F062749	N/A	MKTKPSLILWALSALFMSFWAVKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGWMQQWLKK
Ga0208601_10037056	F102493	N/A	MTTTTFDLIWDYQDDDRENNIKGGSVLIDATYGNKKVKLSAKLEELINEELNPDNF