Scaffold Ga0208601_1000221

Overview

Basic Information

• Taxon OID: 3300020532
• Scaffold ID: Ga0208601_1000221
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11340
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208601_100022111	F044325	N/A	MKQLIQRLLFGYRNNPAAYIPKGGAKLTYKGGNAEAIHSALVLMQYQIRNAKD
Ga0208601_10002213	F068425	N/A	MGMGAKINNMKTQYQLITFAVLCLLLIIGLNHCAKDNPKPIPFDYKTEAEMIKKQFGIEQAILLNQLENVNRRLQTANNAKDSIRKREISLSNTNIALLKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCDSASTIKDSLIVGYKAENLTDSLLLKVSKQETKQQRKGKIAAWCVGGAMFILWLVVGLK
Ga0208601_10002214	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTEKPTRTAVIDGDGC
Ga0208601_10002215	F049410	GGA	MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLIMPLVEWNIKGKFEWEII
Ga0208601_10002219	F102493	N/A	MTTTLTLTLHFDYENDDRENNIRGGWVLTDITNGKTSVHLSPKLEQLLNEELDPENF