Scaffold Ga0208487_1010359

Overview

Basic Information

• Taxon OID: 3300020531
• Scaffold ID: Ga0208487_1010359
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F009005	Metagenome / Metatranscriptome	324	Y
F011934	Metagenome / Metatranscriptome	285	Y
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208487_10103592	F003542	N/A	MSSKVNFDYDLFDSKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMRKMLGDNPNKCVPSSYYSSVRRCLKEINVCYFDTTKRCMVKGSNWNRFVGSEDWSWFIMRTGSCEYSKVIK
Ga0208487_10103593	F009005	AGG	MQHTPDDYNEFKEAELLSLAARVGMDEELLSYAKQIQRQLGSEGDEAFWLDCLEMAYNELIINEL
Ga0208487_10103594	F093404	GAG	MGEQVAWNKCPHSIVELFENPAGEYYPVVQRMDTPALIRGEYIPIGSRLQYPTKWGRKKGATILLEHKIKDKQKQLREAEAELAKLSACLENVHLWENDSKE
Ga0208487_10103595	F011934	N/A	TVQKTLLHEWTHAQQTFRWYNQYQLKFGYKLNPYEIAARENEKLVKRAYKKRK