NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208487_1010359

Scaffold Ga0208487_1010359


Overview

Basic Information
Taxon OID3300020531 Open in IMG/M
Scaffold IDGa0208487_1010359 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1232
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003542Metagenome / Metatranscriptome480Y
F009005Metagenome / Metatranscriptome324Y
F011934Metagenome / Metatranscriptome285Y
F093404Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208487_10103592F003542N/AMSSKVNFDYDLFDSKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMRKMLGDNPNKCVPSSYYSSVRRCLKEINVCYFDTTKRCMVKGSNWNRFVGSEDWSWFIMRTGSCEYSKVIK
Ga0208487_10103593F009005AGGMQHTPDDYNEFKEAELLSLAARVGMDEELLSYAKQIQRQLGSEGDEAFWLDCLEMAYNELIINEL
Ga0208487_10103594F093404GAGMGEQVAWNKCPHSIVELFENPAGEYYPVVQRMDTPALIRGEYIPIGSRLQYPTKWGRKKGATILLEHKIKDKQKQLREAEAELAKLSACLENVHLWENDSKE
Ga0208487_10103595F011934N/ATVQKTLLHEWTHAQQTFRWYNQYQLKFGYKLNPYEIAARENEKLVKRAYKKRK

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