Scaffold Ga0208487_1002096

Overview

Basic Information

• Taxon OID: 3300020531
• Scaffold ID: Ga0208487_1002096
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3452
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017998	Metagenome	237	Y
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208487_10020962	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEIQRTLGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKR
Ga0208487_10020963	F038234	N/A	MLTIKNIDSLKGTYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI
Ga0208487_10020964	F017998	N/A	MNLERLDLEKYEVLERERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILR