Scaffold Ga0208235_1006397

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1006397
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007102	Metagenome / Metatranscriptome	357	N
F008183	Metagenome / Metatranscriptome	337	Y
F009393	Metagenome / Metatranscriptome	318	Y
F018367	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10063971	F007102	GGAG	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVMKFFDAKDKVAKEAIKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSALWTQIVLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMALCILVAAAIFTLVAWGIIAMKGKL
Ga0208235_10063972	F018367	GAG	VVDVASAQIPWPNTDTKIVLVCRVVLPNEKYGANEFLDKDGRVCRWVLETKNDRPN
Ga0208235_10063973	F008183	AGG	MLETDVMAEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLDELMALANKGRGGLWFGMTIVSGVSAVVGYLLNYFKH
Ga0208235_10063974	F009393	AGGA	MSTNSQIAFAPLGETVVVPAASTAPTGVQALVSGRLDAQGTGQYRIINASTFTVFLGVGTTAALATANAVEPVSGNPSPAIVLVPGAVEILRFARTSYFSGLASAAATVYIVQGEGI