Scaffold Ga0208235_1005650

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1005650
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1705
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium DNF00626 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F014840	Metagenome	259	Y
F033405	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10056501	F033405	GGAG	MNSKKTDEQLIEEVNQYMEKYPNATRNQVVLHATGSAIRVRGLAKRGLIKLPEALPKGANTNWNGYFKNTSETNSARKGMKYSV
Ga0208235_10056502	F014840	N/A	MIPFSYAVVDSDGEVIRQYRWSVKEAKWHKDQGKNVVKLDKPIEVKEDLFKLVGECLF
Ga0208235_10056503	F006587	GGAGG	MDSKKYDGTGFILVGLIVGCCITWGIMKYNNTQTKYKMNLKCIQGELYEEVRTNMFVKSHLECFEQRTLQP