Scaffold Ga0208235_1005022

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1005022
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1836
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F029411	Metagenome / Metatranscriptome	188	Y
F085603	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10050222	F029411	AGG	MNADFSTIDPQNELSDLYTPDYREQAPNEDAYLDQSYEDRFELPCMEDYQ
Ga0208235_10050223	F005293	AGGA	MTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVTAYRNQEVIRNRIARGLRRAQQRAWVEKKRSYFTPATFTLGNVVNF
Ga0208235_10050227	F085603	N/A	MNVKIEFNTENAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRHILKDSNGNRIGVVNIGNN