NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208235_1004739

Scaffold Ga0208235_1004739


Overview

Basic Information
Taxon OID3300020530 Open in IMG/M
Scaffold IDGa0208235_1004739 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1906
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F007523Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0208235_10047391F007523N/ALGRLGLGLSKAELSTLSFTEVQAKLAELYGGAAATNAETFQGKIDRLKVGFDEAKESLGVALLPAVEQFITFLNDQGIPTLNAFIAGLTGDEGLSASLTETQRGAESFGKAIGVVSGIISGFITFLREAIGLVVSLANELIRVVNIIPGVNVGSIPNPAPSAARSSLPSVPRASGGYTTGQGVTNITVNAIDGEGAARAVAKVVNDSAARSNPYLSRAAVKP
Ga0208235_10047392F000468N/AMSVWTPDWKLIVGGVDYTDIAISDIQHQSGRDDIYSQPNPSYIQISLVALNGQTLPFDINDSLDLQVKNSAGTYVSLFGGDITDVSVTVGATGSIATVVEYTIIAMGSLARIAKEIWNDNISQDEDGNQIYEILSSVLLGTWNDVPSATTWATYNATETWANAVNLGLGEIDQPGLYTMTAQSTTVDTIYNIVTDIAKSAFGYVYEANNGNIGYADADHRQNYLLTNGYVELDAGHSLGFGLSTVMRSGDVRNDVYINYGNNFNSQVTASDAASIALYGYKAESINSRVQGAVDAQAIADRYIDQRAYPQPAFQSITFPITNSEIDNADRDDLLGVFMGMPVDIRNLPSQISGGTFQGYVEGWSWSTRFNELFLTINVSPTAFSQVAMRWNTTPITEAWNTIDPTLTWEYA
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