Scaffold Ga0208235_1002935

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1002935
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025009	Metagenome	203	Y
F037222	Metagenome	168	Y
F047492	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10029352	F025009	AGGA	MTPMKVKWYEGRKGKIGIAKVQTDDGDIEYRISAVDGFLEHMDVQQVVAWGDWFPIEAGDALFPEGV
Ga0208235_10029354	F047492	AGG	MNIFEQGKTLFTQNEFNQALAEAKAEIMSVAVYTTKQAMYLERRACAQMLLDMADNEDEGAVCTALRNAADQLVNRVPVQNQ
Ga0208235_10029355	F037222	GAGG	MDTTTPPPTSQLRLDWLETLTQTYAEMALAGGDQALKDGRRAYLIARFKELEQDFPGITAIIHTKIRAMK