Scaffold Ga0208235_1002249

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1002249
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3105
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F054866	Metagenome	139	Y
F101124	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10022492	F101124	AGGA	MARPSSPNTKNFLRILTDPQRIILLSAGQGDLTKGFENVLDLYQWAYNKGFRPNMDLDSLGISVNNQQPQ
Ga0208235_10022497	F054866	AGG	MSKYTITHGSIAAVQYVTLPDGDKVIVTDARDGSEIELPRLPVEVQVAVNRQFGAIFALPYDDRQAFIDNSIPFDVEVTE
Ga0208235_10022498	F002707	GAGG	MTQIEALTQCLVLALVAPDDQKAQQAAELAEQIAHGLTKKQVNQCKQAAIKLWGEQ