Scaffold Ga0208235_1001518

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1001518
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4085
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10015183	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEGNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0208235_10015184	F014956	GAG	MNIHDFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGKAIHYNDEIDWNAISDHKKSLWYDSQNFQINMGNEYSKRTS
Ga0208235_10015185	F041648	N/A	MEALANTLTDNALTRYYELRIKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYVMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCNEAIIKCQTIRENK
Ga0208235_10015186	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPHDINLSLYPVINDRNLMPLVDENEMDWVIIKN
Ga0208235_10015188	F052398	N/A	MNLPAIAMTIEEKVQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKKKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT