Scaffold Ga0208235_1001369

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1001369
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4348
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10013692	F023328	N/A	MTVYTPTYRVTIAGVVQTADILSGGTITYGRNDFFEATQPSYCNIELLNKDGASPVVELLDVVIIEVTNSAGSFVKLFTGEVSGVYNRLEAAGAGGKPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIERILQETLFIAWEDLSNTQTWDDFTTETWDSYGIQGIDTIDPGRYEVLARTAEIDQAFNLTDETQQSGLGYLYDTTDFEIGYADAERRITNYSTNLIELDANLANADIQTRLQTADIVNSVVIQYDDPVLEEAAQNDTSINDYGLLQEIRRTILAEQLDAQEQAVNFVNFRGTPRTSLEAVSVNLANDAMTDTVRDDLLAVSMDTLLYVDNIPVGLISSGFFEGFVEGWTWSLGRRNIELTMSVSNSIYSTLDVQWENYNAVIQWQNLDNTTTWLDVI
Ga0208235_10013694	F012447	GAG	MAKAIQLVKVDKDYRGLLRAFSKMDDIAKNDMKKIASALAERGANYAKGAANNAPYNVKQAQAVADSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYEKIRDAWKAGL
Ga0208235_10013696	F008811	AGGA	MATTILSGRQLTLSVNGNNYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGASPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGLVLPQYPSVTASGGDVQTCSVSLQVVGIPTEDLTA