Scaffold Ga0208235_1001081

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1001081
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5208
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026250	Metagenome / Metatranscriptome	198	Y
F030424	Metagenome	185	N
F064670	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_100108110	F030424	AGGAGG	MIDVNQFAELELRVNDLQNALARVTEERDNYKDTADSLFRELEACRTTLTQANSDITRLRIFLAQGAEL
Ga0208235_100108111	F064670	AGGAG	VSPMILSDKVAGIIKDLEVQVGIKDIALSSAMRRIEDLKSEVYELTNTIEELRESLRDR
Ga0208235_10010813	F026250	AGGAGG	MTNRQKQIGTVIGMGILWGFWLMPTAEDLPDAQPATPLEWKLFIALNFAAIIYVHILNIREHQRQLRIEAQERYWERMETRSRNNHPTAK